PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220980.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 606aa    MW: 65180.9 Da    PI: 9.408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220980.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0580102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k F r  nL+ H r H
  XP_008220980.1  80 FICEVCNKGFQREQNLQLHRRGH 102
                     89*******************88 PP
2zf-C2H213.10.00029156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_008220980.1 156 WKCEKCSKRYAVQSDWKAHSKTC 178
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-779102No hitNo description
Gene3DG3DSA:3.30.160.606.8E-679102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9980102IPR007087Zinc finger, C2H2
SMARTSM003550.005280102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355160121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-7151176No hitNo description
SMARTSM00355130156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAAASSSIPF FGSTGSREET QGQMTSTLQQ HSSATPSSNT TAAAAAPPPQ KKRRNQPGNP  60
NPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEPRRKV  120
YLCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPSSLNT MGGQLYGNNH MSLGLSQIPS  240
LQNQTHLPNN MLRLGNAGGA KYEHLITPSN PSSFGSQAMP NSSNFFMRDI ANQQGFQDQH  300
QFPSKAALHG LMQLPDLHSN GNNNNSPSST SAANLFNLSF FSNNSTSSSL TPPDHQFSDG  360
NGGGQGFSMG AADHHNMGSA TLPSLYGNSM QHESNIASHM SATALLQKAA QMGSTTSTES  420
SSLLRGLGNS STRAAKSGRQ LVSAPSTVGV SFSGDHHCSG GEQQHLRSSQ QVDNENHLQG  480
LMNSLASGGS SVFGGGGVHG QDHNSFGGFS SGNTGTRVNA MDQQHNNTNY DEAKLHQNLG  540
VSFGGSDKLT LDFLGVGGMV RNMSGGHGYS QRDHHQQHHG INMIGTLDPE LKSAQASQPF  600
GGTAMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34152219370Zinc finger protein JACKDAW
5b3h_F2e-34152219370Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4550951e-132AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220980.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic
TrEMBLM5XP200.0M5XP20_PRUPE; Uncharacterized protein
STRINGXP_008220980.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-117indeterminate(ID)-domain 5