PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220806.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 99aa    MW: 11128.5 Da    PI: 8.8932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220806.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249e-08551246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+WT    + + +a + + ++   +W+  ar +g g++ +++k ++ +
   XP_008220806.1  5 GSWTSRQNKMFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKRHYEM 51
                     89********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.638257IPR017884SANT domain
SMARTSM007174.6E-7355IPR001005SANT/Myb domain
CDDcd001674.45E-6653No hitNo description
Gene3DG3DSA:1.10.10.605.3E-5659IPR009057Homeodomain-like
SuperFamilySSF466896.93E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNLARAVGGK SVEEVKRHYE MLVEDVNKIE  60
AGEVPLPNYR KPGAAAGNGK AYSNSMDIEE QRMKSLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-32299693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220806.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220806.15e-69PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1737e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A314XK315e-67A0A314XK31_PRUYE; Protein RADIALIS-like 3
STRINGXP_008220806.12e-68(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-38RAD-like 6