PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008220724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 567aa MW: 63292.2 Da PI: 8.6661 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.2e-16 | 22 | 107 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s l+s rl +p +f+ +++g + s ++l +sg+ W+v l +k g ++ GW Fv+++ ++ gDf++F++dg+ +f +v +f++ XP_008220724.1 22 SADLSSERLKIPERFMIHMEGRT--SGLVSLFGPSGNAWNVDL--IQKNGDLFFHHGWPAFVRDHFVECGDFLIFRYDGELCF--TVLIFDQ 107 66788999********9998884..458***************..77778899*************************99999..9999986 PP | |||||||
2 | B3 | 42.6 | 1.1e-13 | 247 | 327 | 13 | 94 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 s l +p kf +h ++++++l+l + +g+sW+v+ ++ +++l +GW Fv+ n++k gD+++F+l+++ ef+ +v XP_008220724.1 247 SYTLNIPCKFSVAHL--PNCKVKLVLHNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVHECEFRVHV 327 556899****99996..45999***************9445555667999*************************99996665 PP | |||||||
3 | B3 | 47.6 | 2.9e-15 | 456 | 547 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k++++ + s l +p +f +eh + +++++l++++g+ W+v+ + k++ +++ +GW Fv+ n+++ gD+++F+l+g+ +e+ XP_008220724.1 456 VKIMKKFNICGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDVNIGDICIFELVGK--REMQ 544 5666555666667899*********533....3468***************5544444379999*********************9984..4455 PP EEE CS B3 94 vkv 96 v++ XP_008220724.1 545 VHI 547 655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-22 | 10 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-22 | 11 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-17 | 15 | 106 | No hit | No description |
PROSITE profile | PS50863 | 13.662 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-12 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-14 | 22 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-22 | 226 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-23 | 228 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.15E-17 | 233 | 327 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 235 | 331 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-9 | 235 | 331 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 241 | 327 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-22 | 447 | 548 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-22 | 448 | 549 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.24E-19 | 453 | 547 | No hit | No description |
Pfam | PF02362 | 1.2E-12 | 455 | 547 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-10 | 455 | 553 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 455 | 551 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MAEEAQKETS NARRPHFFAF YSADLSSERL KIPERFMIHM EGRTSGLVSL FGPSGNAWNV 60 DLIQKNGDLF FHHGWPAFVR DHFVECGDFL IFRYDGELCF TVLIFDQSAC EKEAAFHSEC 120 GQDSSNFEKY MGRKRGREEA ASSGKLVDGV AKKMRDSSSE EGCGHEGVMC EEATCSKEIK 180 RAEKPGLDIV LCKANASIQN TCGKGDGLNV NGRVCVQMSS AHEIAQSFSS SNPYFVRIMK 240 SFNISGSYTL NIPCKFSVAH LPNCKVKLVL HNWKGESWTV NSVPSTRVHT SHTLCGGWMA 300 FVRYNDIKLG DICIFELVHE CEFRVHVQSG ETSSWLSAEL ALPSIKTFKS LSKIMTGNSP 360 KVHSKSIRKI EKADKIAPKK FQEAAFTNDA RKYGSTSKSL TKVSLSQSKA ANKKLVNHRK 420 KIVEDELNPG SSLRMRLTLD EERAARSFTS CFPSFVKIMK KFNICGSYTL KIPYQFSTEH 480 LPNYKTEIVL RNSKGECWTV NSVPDSKGRV VHTFCGGWMA FVRGNDVNIG DICIFELVGK 540 REMQVHISGI GKKGFDHQDG EATSNAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008220724.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220724.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | M5XC50 | 0.0 | M5XC50_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220724.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-20 | B3 family protein |