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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008220723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 106aa MW: 11931.8 Da PI: 11.1426 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 10 | 85 | 13 | 85 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 ++ l++p +fa+++g++ ++ ++l+d+sg sW + l+ +++s r + t+ W +F +an+Lk gD+++F l+ XP_008220723.1 10 KAYLTIPARFARSNGIVATS--RIILKDPSGISWPLILSRwesiSRGSHRiAIRTNEWYKFYEANKLKNGDVCTFNLK 85 4679***********99766..6***************6647664444445667799******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.1E-6 | 1 | 93 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.703 | 1 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.59E-15 | 1 | 90 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-16 | 4 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-16 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.6E-13 | 10 | 85 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MKKSHGDPHK AYLTIPARFA RSNGIVATSR IILKDPSGIS WPLILSRWES ISRGSHRIAI 60 RTNEWYKFYE ANKLKNGDVC TFNLKPVSSK SGSKSARVMD VQITRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008220723.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220723.1 | 1e-73 | PREDICTED: B3 domain-containing protein REM3 | ||||
TrEMBL | A0A314UVI6 | 2e-54 | A0A314UVI6_PRUYE; B3 domain-containing protein REM8-like | ||||
STRING | XP_008220723.1 | 5e-73 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14574 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31620.1 | 4e-08 | B3 family protein |