PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 195aa MW: 22400.4 Da PI: 7.5478

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220701.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.4	3.5e-18	7	55	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + XP_008220701.1 7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69****9.******8.....334********************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.81E-34	6	66	No hit	No description
PROSITE profile	PS51032	20.719	7	64	IPR001471	AP2/ERF domain
Pfam	PF00847	7.3E-11	7	56	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-41	7	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.6E-34	7	64	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-20	7	66	IPR016177	DNA-binding domain
PRINTS	PR00367	1.0E-10	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNAS QSSASKLLSA TLTAKLHRCY MASLQMTKTS LQEPKKPQPC FVDTKNDNAE 120 KAIELGVNFP EKKPETRHEQ EEPEETMNWV FSKVKVESSQ QQFKPLEDDH IEQMIEELLH 180 YGSIELCSAV APQAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-17	8	71	6	70	ATERF1
3gcc_A	4e-17	8	71	6	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00526	DAP	Transfer from AT5G25190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220701.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT369551	0.0	KT369551.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220701.1	1e-146	PREDICTED: protein PPLZ02
Swissprot	Q94AW5	1e-78	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	A0A0M3SU38	1e-143	A0A0M3SU38_9ROSA; AP2/EREBP family transcription factor-like protein 19
TrEMBL	M5XSZ7	1e-143	M5XSZ7_PRUPE; Uncharacterized protein
STRING	XP_008220701.1	1e-146	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1106	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	5e-58	ERF family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]