PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220562.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 296aa    MW: 32494.3 Da    PI: 7.9734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220562.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  ++k +G g W++ +++ g++R++k+c++rw++yl
   XP_008220562.1 14 RGAWTALEDKILTSYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding491.4e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ 
   XP_008220562.1  67 RGNISGDEEELIVRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      6777889***************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.659961IPR017930Myb domain
SuperFamilySSF466893.09E-2711108IPR009057Homeodomain-like
SMARTSM007172.7E-121363IPR001005SANT/Myb domain
PfamPF002498.6E-141461IPR001005SANT/Myb domain
CDDcd001673.48E-91661No hitNo description
PROSITE profilePS5129423.52362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2365115IPR009057Homeodomain-like
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002492.0E-1367111IPR001005SANT/Myb domain
CDDcd001675.77E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRSPCCSKQ GLNRGAWTAL EDKILTSYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SGDEEELIVR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAKGEP  120
TSTGSSKETS PPPTKSRAKR REIESKTTKP SAAAAAAATL PPVIRTKATR LSKVLVPTIP  180
QIPSDDYNQT ANASSSTKPS ELQAHQTQLT DQQVNVGDCT NNLNNNYGCT DEDDDIEAKG  240
GFCNAFQSLP LDEAMINATW TGGNDCDLED YGATLDLDSL AFLLDSEEWP SQENIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220562.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9892811e-124JQ989281.1 Fragaria x ananassa transcription factor MYB9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220562.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLM5Y1T60.0M5Y1T6_PRUPE; Uncharacterized protein
STRINGXP_008220562.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.18e-62myb domain protein 7