PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220428.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 292aa    MW: 31852.6 Da    PI: 7.8265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220428.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l+ + + +G+g +W + +++ g++R++k+c++rw++yl
   XP_008220428.1 14 RGPWSPDEDATLKSYLETHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding46.49e-1569111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +  q+G++ W+ Ia++m  gRt++++k++w++
   XP_008220428.1  69 GCFTEEEDNIICSLYSQMGSR-WSVIASRMS-GRTDNDVKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.443962IPR017930Myb domain
SuperFamilySSF466891.2E-2611109IPR009057Homeodomain-like
SMARTSM007171.0E-101364IPR001005SANT/Myb domain
PfamPF002495.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-241569IPR009057Homeodomain-like
CDDcd001675.13E-81662No hitNo description
PROSITE profilePS5129422.70663117IPR017930Myb domain
SMARTSM007172.2E-1367115IPR001005SANT/Myb domain
PfamPF002499.7E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2370117IPR009057Homeodomain-like
CDDcd001672.69E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRTPCCDKD NVKRGPWSPD EDATLKSYLE THGTGGNWIL LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGC FTEEEDNIIC SLYSQMGSRW SVIASRMSGR TDNDVKNYWN TKLKKKLFGG  120
KQNLTTKNSK EPTNNATLPG SAASLALPCV PKAEPQDSAF STFQTQIPAT LHMLTDVNSG  180
LNACNQTWTL NSPDQLYSSK VMAFSDFGAS SKKSYTTVSL SQDGSNNSDS SSIAAVDKCA  240
SLPGNGSLDD SGMFTDFGLP YDVNYGMCFG EKTSEFGPAS CTNFGDLFSS SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220428.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220428.10.0PREDICTED: transcription factor MYB36-like
TrEMBLM5XR320.0M5XR32_PRUPE; Uncharacterized protein
STRINGXP_008220428.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.19e-70MYB family protein