PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220363.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 382aa    MW: 42167.4 Da    PI: 4.9809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220363.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-103073471055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_008220363.1 307 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 347
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-14296363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.926297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-12302358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-12306351No hitNo description
PfamPF000101.5E-7307347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MESAGVFADG EWESLSRLFS TEEIEFTPHF LSQGSFPFQH NEGMNFEIPA SFCPNIPEAE  60
MGLSKVNDSF FQHPSDALNS NVHYLSQESC YGNNNHGSAG IFTAILNQEN YYFGNSCHVP  120
VANDISASMD VYMNHHDHDG KSFGSFIPTF SDIVMEGSVS NKEDSGSDRL GFSDDSQPAA  180
IAIPGEELRL KRVHDVAEDK SNNDKSDSNS KKKPCLSKDV QKTKKNNARS KKGQKANSDG  240
KVKDEEESNT GADRQSTSSC SSEDDNGSQE TNGGETSDPK TSSALNLNGK TRANRGSATD  300
PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV HYVKFLQLQI KLLSSDDMWM  360
YAPIAYNGMD IGLSLQKMSP LL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220363.10.0PREDICTED: transcription factor bHLH77
TrEMBLM5XIA20.0M5XIA2_PRUPE; Uncharacterized protein
STRINGXP_008220363.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-49ROOT HAIR DEFECTIVE 6-LIKE 2