PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220254.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 412aa    MW: 47043.1 Da    PI: 7.3267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220254.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027154177123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg+ ++++ +Lk+H +  H
  XP_008220254.1 154 YICGVCGRKCKSNLDLKKHFKQlH 177
                     89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.1E-774144IPR029060PIN domain-like
PROSITE profilePS5015710.616154182IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
CDDcd061676.22E-12165308No hitNo description
Gene3DG3DSA:3.40.50.10105.1E-7239304IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNLLCNPIHT FPYKPFPLIS LHSSRSPFFN SKRSFQPQPI TTLSIRTRSY VAIKAAANSE  60
IDMVQNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQRFGEV VESSAYANRH  120
AFDHLPQWVI EQRRERKQLD ILERKGLVVP SEPYICGVCG RKCKSNLDLK KHFKQLHERE  180
RQKKLNRMRS LKGKKRQRFK ERFVSGNHKY NEAARSLIKP KVGYGLASEL RRAGVFVKTV  240
EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR KAREANLGTV VVGDFDGALG  300
RHADVWMPWI GVENGEVSEK DLVPKRRRSE FFDEDDDDKG DGLFSHSVFD GGSELDNVVD  360
ELVVTRSPSS GMRISAFSEG ELEGGDWVED DGDSEDGEDY LLDSEDEEDG FF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220254.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220254.10.0PREDICTED: uncharacterized protein LOC103320360
TrEMBLM5XCQ90.0M5XCQ9_PRUPE; Uncharacterized protein
STRINGXP_008220254.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-173C2H2-like zinc finger protein