PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219973.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 327aa    MW: 37046.4 Da    PI: 5.385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219973.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.41.8e-0830100879
        trihelix   8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                     l+L++    +e +  ++ +  ++W+ +s+++++ g+ r+  q + kw+ l  +yk ik++e+    +  s +
  XP_008219973.1  30 LLLVNEIAAVEADCLKALSSFQKWKIISQNCSALGVPRTLDQYRRKWDALFLEYKSIKQWESAS-RGGASYW 100
                     5666666667777777778889***************************************985.4444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-62495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKVQGSQSGS SSRRSTRSQV APDWNPTDEL LLVNEIAAVE ADCLKALSSF QKWKIISQNC  60
SALGVPRTLD QYRRKWDALF LEYKSIKQWE SASRGGASYW VLEIGRRKQK GLPENFDNEL  120
FRAIDNLVRV RGNQSDTDPD SDPEAEIDAE ADVPDVVAEP ESKRRRRRST HQKSCPIKNS  180
FRRCKVERPE ETHVEEKPEE THAEVKPQET HAEEKPVGSC LEVIPQKSLA EEKSQKSCAK  240
KHKNSQIKEK AISIEEQEQI AVMQLHENVE LIQAIVNENA DHEAADVKST GDPQTDLVRR  300
QGDQVIACLG DIVKTLDQLR QLVQECE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219973.10.0PREDICTED: trihelix transcription factor ASR3
TrEMBLA0A314UEN30.0A0A314UEN3_PRUYE; Trihelix transcription factor ASR3
STRINGXP_008219973.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-56sequence-specific DNA binding transcription factors