PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008219518.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 668aa MW: 77953 Da PI: 6.7813

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008219518.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.8e-23	57	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++eleHnH+++ XP_008219518.1 57 DFYNIYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVEVELEHNHQVS 141 6*******************999*************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-21	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-27	264	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.396	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-4	558	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEEVCLNSEP VFEEGDEYEL EGDFTEHDNV TGETQRRKDP TAPTVGLEFD SFDEAYDFYN 60 IYGKEQGFGI RVSNSWFRSK RKERYRAKLS CSSAGFKKKS EANNPRPETR TGCPAMVVIR 120 LVDSKRWRIV EVELEHNHQV SPQIKRFYKS HKKMILAAKS AQPLPEPVTE IHTIKLYRTP 180 VMDVGSNGYS NFTESEGLNS IDLSKHLELK EGDAHAVYNY FCRMKLMNPN FYYLMDLDDD 240 GHLRNVFWAD ARSRAAYGYF CDTVAIDTTC LSNKYEIPLT SFVGVNHHGQ SVLLGCGFLG 300 HESVENFVWM LRAWLKCMLG QPPQVLITDQ CKPLQIAVSE VIPNARHCYC LWYIMQKVPE 360 KLGGLKGYEA IKRQLHKSVY NSLKIAEFET SWAEMIKCHE LGENRWLQIL YEDRQMWVPV 420 YLKDTFFSGM IPIQENESLT AFFDGYVHKH TSFKEFVDKY DLALHRKRMK EVVADLESRS 480 SSFELKTKCN FEVQLCKVYT KEIFKRFQLE VEGMYSCFNT RQVSVNGPII TYIVKERVEV 540 EGKEKEVRCY EVLYETTQVD IRCICSLFNY KGYLCRHALN VLNYNGVEEV PSRYILPRWR 600 KDFKCRYLLH HGSSNIDVYN PVYWHNHLYK LALPVAEEGA QSEEHYKTTL QALEELLNKF 660 HLVEDTLV

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEEVCLNSEP VFEEGDEYEL EGDFTEHDNV TGETQRRKDP TAPTVGLEFD SFDEAYDFYN  60
IYGKEQGFGI RVSNSWFRSK RKERYRAKLS CSSAGFKKKS EANNPRPETR TGCPAMVVIR  120
LVDSKRWRIV EVELEHNHQV SPQIKRFYKS HKKMILAAKS AQPLPEPVTE IHTIKLYRTP  180
VMDVGSNGYS NFTESEGLNS IDLSKHLELK EGDAHAVYNY FCRMKLMNPN FYYLMDLDDD  240
GHLRNVFWAD ARSRAAYGYF CDTVAIDTTC LSNKYEIPLT SFVGVNHHGQ SVLLGCGFLG  300
HESVENFVWM LRAWLKCMLG QPPQVLITDQ CKPLQIAVSE VIPNARHCYC LWYIMQKVPE  360
KLGGLKGYEA IKRQLHKSVY NSLKIAEFET SWAEMIKCHE LGENRWLQIL YEDRQMWVPV  420
YLKDTFFSGM IPIQENESLT AFFDGYVHKH TSFKEFVDKY DLALHRKRMK EVVADLESRS  480
SSFELKTKCN FEVQLCKVYT KEIFKRFQLE VEGMYSCFNT RQVSVNGPII TYIVKERVEV  540
EGKEKEVRCY EVLYETTQVD IRCICSLFNY KGYLCRHALN VLNYNGVEEV PSRYILPRWR  600
KDFKCRYLLH HGSSNIDVYN PVYWHNHLYK LALPVAEEGA QSEEHYKTTL QALEELLNKF  660
HLVEDTLV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008219518.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008219518.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	M5Y3I6	0.0	M5Y3I6_PRUPE; Uncharacterized protein
STRING	XP_008219518.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]