PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008219455.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 290aa MW: 33178.4 Da PI: 7.5432

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008219455.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8.2e-06	121	140	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ XP_008219455.1 121 FSCHVCFKTFNRYNNLQMHM 140 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.41E-5	114	143	No hit	No description
PROSITE profile	PS50157	10.055	121	148	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-4	121	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	123	143	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.57E-5	187	225	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEPSEFSSSS SPFFSANDHV ETLNLFPNCE TPNAHLEPLP LISCLLRSPE HQVPNSHDEN 60 PKACNEDHKE DEVTVALHIG LPEYSDGSVN YLNEKEDENN VTAQKYWIPS PEQILIGFTH 120 FSCHVCFKTF NRYNNLQMHM WGHGSQYRRG PESLKGTQPR AMLSIPCYCC AEGCKNNIDH 180 PRAKPLKDFR TLQTHYKRKH GMKPFMCRKC GKLLAVKGDW RTHEKNCGKR WLCICGSDFK 240 HKRSLKDHIK AFGHGHRPFP PNSFDEVRDL DEDTSTTPSL FKGMSSDTTS

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008219455.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008219455.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-116	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A251RGP6	0.0	A0A251RGP6_PRUPE; Uncharacterized protein
STRING	XP_008219455.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-118	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]