PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218386.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 266aa    MW: 30315.9 Da    PI: 5.4001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218386.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-17550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd+ll ++++q+G g W++++   g++R++k+c++rw++yl
   XP_008218386.1  5 PWTKEEDQLLRKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                     7*******************************************97 PP
2Myb_DNA-binding475.7e-1556100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ +eE +l++++ k+lG++ W+++a++++ gRt++++k++w+ +
   XP_008218386.1  56 RGSFEEEEIDLIIKLQKLLGNR-WSLVAARLP-GRTGNDVKNYWNCH 100
                      899*******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.981154IPR017930Myb domain
SMARTSM007177.1E-14252IPR001005SANT/Myb domain
SuperFamilySSF466895.5E-27497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-21557IPR009057Homeodomain-like
PfamPF002492.0E-15550IPR001005SANT/Myb domain
CDDcd001675.67E-12550No hitNo description
SMARTSM007178.6E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129419.155105IPR017930Myb domain
PfamPF002492.0E-135698IPR001005SANT/Myb domain
CDDcd001674.86E-1058101No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2258106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGGIPWTKEE DQLLRKCIEQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL HPNIKRGSFE  60
EEEIDLIIKL QKLLGNRWSL VAARLPGRTG NDVKNYWNCH LSKKLNAQED EDKNKHCARN  120
VQAMRPRASN YASTNSKRPY STALDQAPSN NFCQPVNLLA QEGGSSSRTQ IPTPMPMPML  180
CNIGDGQNQM FQAEHDESNK NVLSVEEEDI NDGINMGDFP MEGLPFKGVG EHDQDDDPAD  240
DDGVNKHNKW EWDDSILGDV DLWTHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2351079110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1592320.0KT159232.1 Prunus persica R2R3-MYB transcription factor (MYB9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218386.10.0PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV92e-52MY113_ARATH; Transcription factor MYB113
TrEMBLM5W0N91e-167M5W0N9_PRUPE; R2R3-MYB transcription factor
STRINGXP_008218386.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-55myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]