PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218266.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 341aa    MW: 35969.4 Da    PI: 6.044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218266.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-10190234554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  XP_008218266.1 190 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 234
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-11183239No hitNo description
SuperFamilySSF474591.24E-15183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15187245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7190234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAGNPPEGLG DDFFEQILAV PPSYSTGGAD SAGGGYGDVG SMPMVLQLGS GGSSSAGGGG  60
GGSGGGGYRG VGMGMGMPLG LNLEQGGFIG QERFRELREE VEANTNNNIN TSNVSASVSS  120
AMNERDSVHM TNLFPAFGHL QNHSLRPTPP PPQPHQFHSQ PSPGPVAAVH HPPAIRPRVR  180
ARRGQATDPH SIAERLRRER IAERMKALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKV  240
LSMSRLGGAG AVAQLVADVP LSAVEGEGIE GGTNQQAWEK WSNDGTEQQV AKLMEEDVGA  300
AMQFLQSKAL CIMPISLAPA IFRTHQPDAT TLVKPESNSS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272187e-38AB627218.1 Malus x domestica mRNA, microsatellite: MEST049, clone: FLW01_46_C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218266.10.0PREDICTED: transcription factor UNE12-like isoform X2
SwissprotO227681e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A314YM140.0A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGEMJ066850.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]