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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008218226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GeBP | ||||||||
Protein Properties | Length: 416aa MW: 45245.8 Da PI: 4.8505 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 75.6 | 8.8e-24 | 147 | 218 | 27 | 97 |
DUF573 27 gk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 g+ + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hdq +fe+s+kiW XP_008218226.1 147 GShHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKIASGKEVSFKSPHDQATFEISRKIWS 218 5523355****************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-22 | 149 | 218 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAPDQDDAVL PEGDLSSSSQ DDEEEDDVVD DDEEEDDVDD DDDVLNDDVI NSASPSTSSA 60 GATDSLPVAI ATPTVTVALP ARDPPPLALA TTTSTATTVI ANDAVLSSDP KRHAVLSPQP 120 EEKKPAALAD SRRLSQRRWN RRHGNKGSHH GQNDTALFYD QIKSKLQLDF NKNQLVEKLR 180 RLKKKYRNVL NKIASGKEVS FKSPHDQATF EISRKIWSNI GRIGPDDNAL DDEDPSPNPN 240 NPNFNNYEIK NEEAAGFAGD KKSTPRSRKR SRTQLRAEEK PPPSRGGFVE PSLVIKDNNN 300 SINNSNHGGG GNSCSNCNVH GLIEETVKSC LSPLFKELLS SAMGGGSARG FGGLSLNPIP 360 LSFGGPSMNL NFGGGEGADE KWRKQQILEL EVYSKRLELV QNQIKVALEE LRSSRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008218226.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008218226.1 | 0.0 | PREDICTED: rRNA biogenesis protein rrp36 | ||||
TrEMBL | A0A314YY09 | 0.0 | A0A314YY09_PRUYE; Putative transcription factor | ||||
STRING | XP_008218226.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-53 | DNA-binding storekeeper protein-related transcriptional regulator |