PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 479aa MW: 54043.9 Da PI: 5.6621

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004517294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	457.4	8.8e-140	52	476	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA++v+sg+le+a+++L+++s+laspdgd+mqR+ ayfteALa r+++++++l +al++++ see+ + k+f+e++P+lk+++ XP_004517294.1 52 LIHLLLTCANHVASGNLENANTTLEQISQLASPDGDTMQRISAYFTEALADRILKTWPGLHRALNSTRII--LLSEEILVKKFFFELFPFLKVAY 144 689***********************************************************988886..69***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +++NqaI+ea+ege++vH+iD+++ +++QW+aLlq L++R+egpp+lRiTg+++ +ke l +++++L++ Ae+l++pf+fn+ v+++le+l+ XP_004517294.1 145 ILTNQAIVEAMEGEKMVHVIDLNAAEPAQWIALLQVLSARSEGPPHLRITGIHQ----QKEILDQMAHKLSEEAEKLDIPFQFNP-VVSKLENLD 234 **************************************************....9**********************.799** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll............................................................desvsleserd 225 +++Lrvk+gEala++++lqlh+ll ++++s++ ++ XP_004517294.1 235 FDKLRVKTGEALAISSILQLHSLLalddesssrrkttplfsrnsnglhlqkallmnqntlgdflekdmvngyspspdsgssspaSSTASMN--IE 327 ***************************************************************************998744444444..59 PP GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 ++L++++slsPkv+vv+eq+++hn+++++er+leal+ y+a+fd+le++++r+s er kvE++l+g+ei+n++aceg er+erhe+l kW +rl+ XP_004517294.1 328 SFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAAFFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGVERKERHEKLDKWFMRLD 422 9****************************************************************************************** PP GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +GF++vpls++ + qa++ l+ ++ +gyr+ ee+g++v +W+dr+L+s++aWr XP_004517294.1 423 LCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCIVTCWQDRSLFSTTAWR 476 ***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.716	26	456	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-137	52	476	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MESMFQEEGS SSVTCSPLQL FSMMSLSPSI GIGSPYPWLS RELKSEERGL YLIHLLLTCA 60 NHVASGNLEN ANTTLEQISQ LASPDGDTMQ RISAYFTEAL ADRILKTWPG LHRALNSTRI 120 ILLSEEILVK KFFFELFPFL KVAYILTNQA IVEAMEGEKM VHVIDLNAAE PAQWIALLQV 180 LSARSEGPPH LRITGIHQQK EILDQMAHKL SEEAEKLDIP FQFNPVVSKL ENLDFDKLRV 240 KTGEALAISS ILQLHSLLAL DDESSSRRKT TPLFSRNSNG LHLQKALLMN QNTLGDFLEK 300 DMVNGYSPSP DSGSSSPASS TASMNIESFL NALWSLSPKV MVVTEQDSNH NGSTLMERLL 360 EALYSYAAFF DCLESTVSRT SLERLKVEKM LFGEEIKNII ACEGVERKER HEKLDKWFMR 420 LDLCGFGNVP LSYYGMLQAR RFLQSYGCEG YRMREENGCI VTCWQDRSLF STTAWRPRK

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MESMFQEEGS SSVTCSPLQL FSMMSLSPSI GIGSPYPWLS RELKSEERGL YLIHLLLTCA  60
NHVASGNLEN ANTTLEQISQ LASPDGDTMQ RISAYFTEAL ADRILKTWPG LHRALNSTRI  120
ILLSEEILVK KFFFELFPFL KVAYILTNQA IVEAMEGEKM VHVIDLNAAE PAQWIALLQV  180
LSARSEGPPH LRITGIHQQK EILDQMAHKL SEEAEKLDIP FQFNPVVSKL ENLDFDKLRV  240
KTGEALAISS ILQLHSLLAL DDESSSRRKT TPLFSRNSNG LHLQKALLMN QNTLGDFLEK  300
DMVNGYSPSP DSGSSSPASS TASMNIESFL NALWSLSPKV MVVTEQDSNH NGSTLMERLL  360
EALYSYAAFF DCLESTVSRT SLERLKVEKM LFGEEIKNII ACEGVERKER HEKLDKWFMR  420
LDLCGFGNVP LSYYGMLQAR RFLQSYGCEG YRMREENGCI VTCWQDRSLF STTAWRPRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-60	44	478	11	381	Protein SCARECROW
5b3h_A	5e-60	44	478	10	380	Protein SCARECROW
5b3h_D	5e-60	44	478	10	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004517294.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233569	0.0	AC233569.4 Medicago truncatula clone mth2-73i21, complete sequence.
GenBank	CR955008	0.0	CR955008.2 Medicago truncatula chromosome 5 clone mte1-51b2, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004517294.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	0.0	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A1S2Z974	0.0	A0A1S2Z974_CICAR; scarecrow-like protein 3
STRING	XP_004517294.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2383	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	0.0	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]