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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004516685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 345aa MW: 40287.5 Da PI: 8.345 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.7 | 6.4e-18 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+ + r++tf kR+ng+lKK +E S+LCd++v+vi+++++ XP_004516685.1 11 IQKEKSRKTTFQKRKNGLLKKVNEFSILCDVDVCVILYAPN 51 778889********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.4E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.843 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.21E-22 | 2 | 51 | No hit | No description |
SuperFamily | SSF55455 | 9.94E-21 | 2 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-13 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-13 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-13 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGRGRISMEL IQKEKSRKTT FQKRKNGLLK KVNEFSILCD VDVCVILYAP NFEGQGYAEP 60 ETWPKDKKEV QRILQKYFNT TIDRRPKIYD VQEYFKERMK KVEFEISKVR KEMLKIMYPT 120 WDESFNSLSE EQLRLFASIL DSKLDACNQK MNMLQGDVKG KAKVESNKVE KPIAPYLASN 180 SSNYYNLMQN NMPQAQIFHP LINISDKNNL AFWQFQTGQS SQSSPMFVNA QGSYQGESSD 240 EGRYMQSYPW KQVDANSINW ANQVDGNVIY DSKFDMKNKD EAENDQNLSP YYYNGNTLAM 300 QSYPIAMQNI PFQNFQNQPQ GFQFNGYSDM DILQAHMLNY MDGRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004516685.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004516685.1 | 0.0 | MADS-box transcription factor 20-like | ||||
TrEMBL | A0A1S2Z819 | 0.0 | A0A1S2Z819_CICAR; MADS-box transcription factor 20-like | ||||
STRING | XP_004516685.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-28 | M-type_MADS family protein |