PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516403.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 357aa    MW: 40304.2 Da    PI: 5.4528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.8e-28137198159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k++++s+edp ++eitY+g+H+++
  XP_004516403.1 137 MEDGYSWRKYGQKDILGAKFPRGYYRCTHRnaqGCLATKQMQKSEEDPMICEITYKGRHTCT 198
                     58***************************98899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.114132195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-27134199IPR003657WRKY domain
SuperFamilySSF1182904.45E-24135199IPR003657WRKY domain
SMARTSM007746.8E-38137199IPR003657WRKY domain
PfamPF031065.5E-25138197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEENMKCEKI GLISELMQGE ELTKKLYDQL FSPSSSSSSS SSSSPSPSTS SHVSNEVLID  60
KILLSIEKAL TMVKGNVGQI KTNNVNIIDS YCSNGTPKSE IQDSKFKHKH VSKKRKTMPM  120
WTEQVKLYLG TAPEGSMEDG YSWRKYGQKD ILGAKFPRGY YRCTHRNAQG CLATKQMQKS  180
EEDPMICEIT YKGRHTCTQA SNLNKTHPSK IKLTFGKNKS QQLHQKNQPQ DQEKIQSLQQ  240
IIFSKIEEFD NIFPPFTFSS QSIGSQNEDN NIFLETNMIE NNFMENENNN NNNIFLESNI  300
FSLSPIHLES NGLGPCESDI SEIISGPNSV VNSPIDLDIF DDINFDMDFT INAQELC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-181391951874Disease resistance protein RRS1
5w3x_D1e-181391951874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516403.10.0probable WRKY transcription factor 46
TrEMBLA0A1S2Z7G30.0A0A1S2Z7G3_CICAR; probable WRKY transcription factor 46
STRINGXP_004516403.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-40WRKY DNA-binding protein 30