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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004516160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 392aa MW: 44017.7 Da PI: 8.661 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.6 | 3.4e-28 | 54 | 143 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k i++l+ + XP_004516160.1 54 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLqfpqgfsqfhhpqtllpfhesitsasH 143 78*************************************************************555555544444444433333332220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.8E-27 | 55 | 196 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.062 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MASSREGYEA KQEGGENSNN NSIEKISKAA STSRQWSSTG LRNPRIVRVS RTFGGKDRHS 60 KVCTIRGLRD RRIRLSVPTA IQLYDLQDKL GLGQPSKVID WLLEATKFDI DKLPPLQFPQ 120 GFSQFHHPQT LLPFHESITS ASHELSLGPL YDPSSSFVGI QNLMARSKFW EMDSRVNNKG 180 KEVEREYFVE KGKWIKTNEE ENHEASYNNF QQTSTQKLFP METHSTLPSF LNNNAMSYNN 240 YHLEPSNLSL SQFGGSHGLF QSQQVDPNQS SGNGLQFPFS FPLQQSTSQL LFGPSSSSTS 300 PSSSSLLSNP FMTTTNSVEN DPRVQQFNHF QFINSSSSSS QAMTHPLLPS FHSFNSPAVR 360 PFPMPFSSKL LDLDNNHNGN QHDNKGCRGD RS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004516160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027186853.1 | 0.0 | transcription factor TCP17-like | ||||
TrEMBL | A0A3Q7XK24 | 0.0 | A0A3Q7XK24_CICAR; transcription factor TCP17-like | ||||
STRING | XP_004516160.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-53 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |