PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004516088.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 407aa MW: 45831.5 Da PI: 8.4383

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004516088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.6e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ XP_004516088.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLAI-ELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSS 107 579**********************999.89***********9888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_004516088.1 108 eGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141 56677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	14	173	IPR003441	NAC domain
Pfam	PF02365	5.9E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MEERNGGDKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LAIELIKQLD IYKFDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGV KTDWMMHEFR LPSLNDSSSS PKKYVDKTIP ANESWAICRI FKKTNATAQR 180 ALSHSWVPPL LETSTSNLLT NDGNNNQFCS QNMMLLAKKP NFTSQFCATN NHNTTSSNTT 240 LCPLNIPSYN NKPIIDPLIY TPLYKLPISN DQNLNNLSTH GLLFSSPLET SSTNCNKTSS 300 MDVSSLLLGM SSSSFLEGAT TSNYIGSLQD HYNNNNNNGY PIMANNINPN VNVAGVNDEE 360 LERERSIGFS YSMPFNVGDA WKSSLVWDTS SCTSDEPSGY STTKCYT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MEERNGGDKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LAIELIKQLD IYKFDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLNDSSSS PKKYVDKTIP ANESWAICRI FKKTNATAQR  180
ALSHSWVPPL LETSTSNLLT NDGNNNQFCS QNMMLLAKKP NFTSQFCATN NHNTTSSNTT  240
LCPLNIPSYN NKPIIDPLIY TPLYKLPISN DQNLNNLSTH GLLFSSPLET SSTNCNKTSS  300
MDVSSLLLGM SSSSFLEGAT TSNYIGSLQD HYNNNNNNGY PIMANNINPN VNVAGVNDEE  360
LERERSIGFS YSMPFNVGDA WKSSLVWDTS SCTSDEPSGY STTKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	8	180	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	8	180	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	8	180	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	8	180	10	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	8	180	10	171	NAC domain-containing protein 19
4dul_B	2e-52	8	180	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004516088.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516088.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-109	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S2Z6T7	0.0	A0A1S2Z6T7_CICAR; putative NAC domain-containing protein 94
STRING	XP_004516088.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-104	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]