PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515955.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 308aa MW: 35198.8 Da PI: 6.1758

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.7	6.7e-17	41	125	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA++ GF ++++s+k+ ++ge + Cs+eg++ ++ + + +t + + +C ak+++k++kdg w++tk+e +H+He XP_004515955.1 41 SFYEEYASRKGFGWKIRSSRKR-QDGEPCYLILSCSREGSKVSKISC---TLKTLPIKVNNCPAKIVIKLDKDGLWNITKFEPDHTHET 125 5**************99887.8888999*******998877...8999*******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-14	41	125	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-31	220	308	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDCGTIEDEG IRVDNLDDDD NACCWEPATG MCFSCLEEVK SFYEEYASRK GFGWKIRSSR 60 KRQDGEPCYL ILSCSREGSK VSKISCTLKT LPIKVNNCPA KIVIKLDKDG LWNITKFEPD 120 HTHETSHTKA SKTFQSLVKD ARGHENVPFC ETDVRNYVNK ERHAIGKEGD GKALISYFCQ 180 IREQNSDFFY DIDLDDDFHV RNVFWADARS RAAYEYFGNV VTFDTTYLTN KYDMPFVAFV 240 GVNHHGQSTL LGCGLLSGED TYSFVWLFKS WLHCMLGNAP LGIVTDQCKA MKNAIELVFP 300 TTRHRWCL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515955.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515955.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S2Z6K1	0.0	A0A1S2Z6K1_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004515955.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-51	FAR1 family protein