PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515801.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 683aa    MW: 75752.4 Da    PI: 6.1206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.14.1e-1252966672373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                      +lL+ c+ea+ s++ +++++++a+l +lasp+g+++ R+ ayfteALa r++r +++++++ ++s++ ++    +e+++al+l+++v+Pi+kf 
  XP_004515801.1 296 LSLLTGCVEAIGSRNVAAINHFIAKLGDLASPRGTSISRICAYFTEALAIRVTRLWPHVFHITATSRDLDRVvdDDETATALRLLNQVTPIPKFL 390
                     689**********************************************************99888777666457778888899*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t N+++l+a+eg+ervHiiDfdi+qGlQWp+L+q+L+sR+++p ++RiTgvg+    sk+el+etg+rLa fAe+l++pfef++ v++rled+
  XP_004515801.1 391 HFTSNEMLLRAFEGKERVHIIDFDIKQGLQWPSLFQSLSSRTNPPSHVRITGVGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDV 480
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                     +l++L+vk++E++aVn+vlqlh++l +    +   +++L l++s++P+vvv++eqea+hn++++ +r++++l+yysalfd++ +++lp es  ri
  XP_004515801.1 481 RLWMLHVKEHETVAVNCVLQLHKTLYDGSGGA--LRDFLGLIRSTNPTVVVMAEQEAEHNAARLDTRVCNSLKYYSALFDAIdHSGLPLESPMRI 573
                     ************************95543333..589*********************************************9999********* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                     k+E++  +rei+n+vaceg++r erh+++++Wr+++ e  GF+ + ++e+++ q + l+++++ d y+++++      +l+lgW d+pL++vS+W
  XP_004515801.1 574 KIEEM-YAREIRNIVACEGRDRLERHQSFGNWRKMMVEhGGFRCMGVTERETIQSQFLMKMYSCDNYSIKKQekegATALTLGWLDQPLYTVSSW 667
                     *****.89***************************977489**********************999***955444456677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.08269644IPR005202Transcription factor GRAS
PfamPF035141.4E-122296667IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MLAGCSSSTL LSPSHRLRSE ASAQFQACHF QLPSMSTQRL DLPCSFPRKD GSSRSQQSVI  60
RPVGISVEKP IEAKNSSNSS STCSLQQNIR LPPLATTAQT LGEIKDEEFW EKGGRNLKRL  120
AEHGSLDESF TTNRAKRKKG SSGNENSDEF GGENFSFSQI GGAGNFWSVH GFGGFNNPSS  180
LPFSLNCSGD EERVCFAPAX XXXXPLPLSN NPWLESAVTK ITNFGEGSHQ HQHHHVNEGS  240
VSNGSSESQS LSLRFNENAS EHEEGNGSGN PYQHEGTEVE TGEEGEQEEH RGFELLSLLT  300
GCVEAIGSRN VAAINHFIAK LGDLASPRGT SISRICAYFT EALAIRVTRL WPHVFHITAT  360
SRDLDRVVDD DETATALRLL NQVTPIPKFL HFTSNEMLLR AFEGKERVHI IDFDIKQGLQ  420
WPSLFQSLSS RTNPPSHVRI TGVGESKQEL NETGDRLAGF AEALNLPFEF HPVVDRLEDV  480
RLWMLHVKEH ETVAVNCVLQ LHKTLYDGSG GALRDFLGLI RSTNPTVVVM AEQEAEHNAA  540
RLDTRVCNSL KYYSALFDAI DHSGLPLESP MRIKIEEMYA REIRNIVACE GRDRLERHQS  600
FGNWRKMMVE HGGFRCMGVT ERETIQSQFL MKMYSCDNYS IKKQEKEGAT ALTLGWLDQP  660
LYTVSSWAPV DVAGSSSSFS QPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6530266926380Protein SCARECROW
5b3h_A3e-6530266925379Protein SCARECROW
5b3h_D3e-6530266925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515801.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1S2Z6920.0A0A1S2Z692_CICAR; scarecrow-like protein 28
STRINGXP_004515801.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein