PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515544.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 193aa    MW: 21804.4 Da    PI: 6.7884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aaka+++a++ + 
  XP_004515544.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAKAYDEAARLMC 55
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.66E-35666No hitNo description
SMARTSM003801.0E-39770IPR001471AP2/ERF domain
PROSITE profilePS5103220.903764IPR001471AP2/ERF domain
PfamPF008472.7E-11756IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-20766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-34764IPR001471AP2/ERF domain
PRINTSPR003675.4E-11819IPR001471AP2/ERF domain
PRINTSPR003675.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAAKAYDEA ARLMCGPKAR  60
TNFPYNPNGP QSSSSKLLSA TLTAKLNKCH MASLSLQMSK QQQQPQREPN HVSSTQMSNS  120
IINPFVVSNN DIVGTSGENG FRWLDEVNWV GFEGQVEVSH QQFQPVLEDD HIEQMIQELL  180
DYGSIELCSV GSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419110.0BT141911.1 Medicago truncatula clone JCVI-FLMt-4B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515544.11e-145ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-72ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S2Z5R01e-143A0A1S2Z5R0_CICAR; ethylene-responsive transcription factor ERF003-like
STRINGXP_004515544.11e-144(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]