PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25726.4 Da PI: 9.8882 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a++aa+ k++g XP_004515403.1 29 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAASAYDAAAYKFKG 78 8********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-21 | 28 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.4E-33 | 28 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.172 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-36 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 29 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKSIISTSEF MERKNQSQPT QQGNEKKKHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD 60 TAEAAASAYD AAAYKFKGNK AKLNFPQLII NNVDANSDLS PCKNINVSSS SSSSSSQYVP 120 SKNLLFPSSL EEGFPNLMQY VQVLCSKDDE DLRRATSCLY NNNNNNNNNN NNNNNNEQFR 180 YYYNLPPLFS TSSRFPSSTS KDVVVPRVGD CGSSERRNGF HERNPRGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-25 | 28 | 86 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515403.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099398 | 2e-34 | BT099398.1 Soybean clone JCVI-FLGm-23J22 unknown mRNA. | |||
GenBank | KT031070 | 2e-34 | KT031070.1 Glycine max clone HN_CCL_192 AP2-EREBP transcription factor (Glyma02g07310.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515403.1 | 1e-168 | ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A1S2Z5E9 | 1e-167 | A0A1S2Z5E9_CICAR; ethylene-responsive transcription factor ERF113-like | ||||
STRING | XP_004515403.1 | 1e-168 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-31 | related to AP2 6l |