PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515250.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 459aa    MW: 51024.8 Da    PI: 6.3018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT  E++++vda k++G g W+ I +++g ++t+ q++s+ qk+
   XP_004515250.1  61 REKWTDKEHQKFVDALKLYGRG-WRQIEEHIG-TKTAVQIRSHAQKF 105
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1555109IPR009057Homeodomain-like
PROSITE profilePS5129419.48756110IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-858109IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1559108IPR006447Myb domain, plants
SMARTSM007172.2E-1160108IPR001005SANT/Myb domain
PfamPF002494.2E-1361104IPR001005SANT/Myb domain
CDDcd001671.54E-963106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEIKNQVEGT KSTIIETESK CHSEGGEQPE NVAKSQDIPS VGNGNNLTPK VRKPYTITKQ  60
REKWTDKEHQ KFVDALKLYG RGWRQIEEHI GTKTAVQIRS HAQKFFSKVV REHDGSAESS  120
IQPIVIPPPR PKRKPLHPYP RKSVDSIKGQ PVPNKSETSP SVNLSVAEND TQSPTSVLSA  180
FASEAFGSAT FSEQTNRCLS PNSCTTETHP INLSPVEKEN DCMTSKPSEE GEKESLATVP  240
LSTDSKPLIC MKSEISSSQE TQCFKEDAAN KQHITSIKLF GRTVSMIDNQ KPMKEDDDDN  300
TKPITIKSDD ETNNVENEKV GQEGISGQLE TQLSLTMCNG MENPNENQCV GECAADVSRW  360
SLYQGLPAVN FKTSCNHQIL NPVPLRPFLK VRTREEESSC TGSNTESVCD NTVDSQTQKH  420
HQKSGRGFVP YKRCLAERDE NSLIVAFEER EGQRARVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515250.10.0protein REVEILLE 7-like
TrEMBLA0A1S2Z5470.0A0A1S2Z547_CICAR; protein REVEILLE 7-like
STRINGXP_004515250.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-57MYB_related family protein