PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515203.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 259aa MW: 29597.1 Da PI: 10.4956

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515203.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.7	3.4e-07	79	104	29	54
HHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRak 54 ++ LAk++gL+ +qV++WF N R + XP_004515203.2 79 DKIMLAKQTGLSRNQVSNWFINARVR 104 5668********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.001	46	112	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.042	48	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-15	74	112	IPR009057	Homeodomain-like
Pfam	PF05920	7.5E-11	78	104	IPR008422	Homeobox KN domain
SuperFamily	SSF46689	4.71E-10	78	115	IPR009057	Homeodomain-like
CDD	cd00086	1.62E-6	79	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MRVTYFNEKR WFVMGQMIVD GNMVRNEGDD RGNMVRNGRD DRGNMVRNKR DNRHKAQSSK 60 KLFAREMSCK FSNYSIDTDK IMLAKQTGLS RNQVSNWFIN ARVRLWKPMV EEIHMLESQQ 120 TQKEPQRDEN PSTSTDKFQL RSNNNIAENP CNSTDKFHNV AYKRTRNELS NMSVLNQQVG 180 SNGVSKGSNV ATSNNGVSLT LSLHKNHGIG LSEPFNMSVA QRFGLALQPD SYVTSTFQSQ 240 NRQFGRDHIG GQLLHDFVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515203.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027186581.1	1e-136	BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	4e-36	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	A0A3Q7XRZ9	1e-135	A0A3Q7XRZ9_CICAR; BEL1-like homeodomain protein 9
STRING	XP_004515686.1	1e-134	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2810	33	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	2e-38	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]