PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515074.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 735aa    MW: 80393.8 Da    PI: 5.4444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2063118156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_004515074.1  63 RKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 118
                     789999***********************************************999 PP
2START221.13.5e-692544741206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el  +a+ +ep+W +        +n+de++++f+++ +     ++ ea+r++ vv+m++++lve+l+d++ qW++ +a    +a+t+
  XP_004515074.1 254 ELAVAAMEELTGMAQMGEPLWLTTLdgaaNVLNEDEYVRSFPRGIGpkpngFKCEASRETCVVIMNHVNLVEILMDVN-QWSTVFAgivsRAMTV 347
                     57899********************999999************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+aelq++splvp R+++fvRy++q+++g+w++vdvS+d+ +++p    + R++++pSg+li++++ng+skvtwvehv
  XP_004515074.1 348 EVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHTDGTWAVVDVSLDNLRPNP----SSRCRRRPSGCLIQEMPNGYSKVTWVEHV 438
                     **************************************************************....59*************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv++g a+gak+wvatl+rqce+
  XP_004515074.1 439 EVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 474
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2242118IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1953120IPR009057Homeodomain-like
PROSITE profilePS5007117.0760120IPR001356Homeobox domain
SMARTSM003894.3E-2061124IPR001356Homeobox domain
CDDcd000861.80E-1962121No hitNo description
PfamPF000463.7E-1863118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084843.128245477IPR002913START domain
SuperFamilySSF559612.75E-35245476No hitNo description
CDDcd088751.64E-129249473No hitNo description
SMARTSM002341.1E-61254474IPR002913START domain
PfamPF018521.9E-58255474IPR002913START domain
Gene3DG3DSA:3.30.530.209.6E-6343441IPR023393START-like domain
SuperFamilySSF559611.37E-25493727No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MFQSNLMEGG QFHPLEMIQN TSESDVIPRI REDECFESAT KSCSENHEGG GASGEDQEPK  60
PKRKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKTQ  120
HERSENTQLR QENEKLRADN MRYREALSNA SCPNCGGPTA IGEMSFDEHH LRLENARLRE  180
EIDRISAIAA KYVGKPVVNY SNIAASLPPR PLEHGVGAGF GNQQGLGMDI YGTSGDLLRS  240
ISGPTEADKP IIIELAVAAM EELTGMAQMG EPLWLTTLDG AANVLNEDEY VRSFPRGIGP  300
KPNGFKCEAS RETCVVIMNH VNLVEILMDV NQWSTVFAGI VSRAMTVEVL STGVAGNYNG  360
ALQVMTAELQ VPSPLVPTRE SYFVRYCKQH TDGTWAVVDV SLDNLRPNPS SRCRRRPSGC  420
LIQEMPNGYS KVTWVEHVEV DDRGVHNLYK QLVSTGNAFG AKRWVATLDR QCERLASSMA  480
TNIPTVDVGV ITNQEGRKSM MKLAERMVMS FCGGVSASTA HTWTTLAGTG ADDVRVMTRK  540
SVDDPGRPPG IVLSAATSFW LPVPPKRVFD FLRDENSRNE WDILSNGGVV QEMAHIANGR  600
DTGNCVSLLR VNSANSSQSN MLILQESLTD STGSFVIYAP VDIVAMNVVL NGGDPDYVAL  660
LPSGFAILSD GNGNGIGDEN GQAGVCGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIA  720
CTVERIKASL SGETA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515074.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515074.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_004515075.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_012575640.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S2Z4T40.0A0A1S2Z4T4_CICAR; homeobox-leucine zipper protein HDG2-like
STRINGXP_004515074.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2