PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514387.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 295aa    MW: 32997.9 Da    PI: 5.97
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32123179258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers+edp++++itYeg H h
  XP_004514387.1 123 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLH 179
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.049117179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-29120179IPR003657WRKY domain
SuperFamilySSF1182909.81E-27120179IPR003657WRKY domain
SMARTSM007741.7E-35122181IPR003657WRKY domain
PfamPF031064.4E-26123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MIESAMSNTM MEKVIASNWS EGSEKDELLR ELFDDESPLL MLPEETITNI SDSSKEQAFN  60
KFISNIYSGP TILDIENALS VTNHREHFPQ LSSTRVSILE RSWSKIENKY TLKIKCFGNG  120
MGDDGYKWRK YGQKSIKNSP NPRSYYRCTN PRCGAKKQVE RSNEDPDTLI ITYEGLHLHF  180
TYPYFLVGQS SHPPIKKSKP TSSQGQQAQC QKPNHEAQAS GSLGLISPTL LGSTQDTAQE  240
NLGSQGLLED MVPFIVRNPT NNTDIDDFSK FSFSSQICTT STSTSCYTVG LNSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-211231791874Probable WRKY transcription factor 4
2lex_A5e-211231791874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150377e-47AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514387.10.0probable WRKY transcription factor 49
TrEMBLA0A1S2Z3I10.0A0A1S2Z3I1_CICAR; probable WRKY transcription factor 49
STRINGXP_004514387.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-55WRKY DNA-binding protein 49