PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514245.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 401aa    MW: 44278.1 Da    PI: 7.1333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23.1e-32140196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpv+kkve+s  d++v+ i+Y+geHnh+
  XP_004514245.1 140 DDGYNWRKYGQKQVKGSEFPRSYYKCTYPSCPVRKKVECSL-DGHVTAIIYKGEHNHQ 196
                     8****************************************.***************8 PP
2WRKY103.51.2e-32294351259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k+v +tYeg+Hnh+
  XP_004514245.1 294 EDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDRKAVMTTYEGKHNHD 351
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28131198IPR003657WRKY domain
SuperFamilySSF1182907.72E-25138198IPR003657WRKY domain
SMARTSM007744.5E-34139197IPR003657WRKY domain
PROSITE profilePS5081123.365139198IPR003657WRKY domain
PfamPF031069.0E-25140196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-36279353IPR003657WRKY domain
SuperFamilySSF1182901.11E-28285353IPR003657WRKY domain
PROSITE profilePS5081137.493288353IPR003657WRKY domain
SMARTSM007743.4E-37293352IPR003657WRKY domain
PfamPF031064.6E-25294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVGGGNGEER PPWSMESGGT PVGLSPGPMT LLSNLFGDND DCKSFSDLLA GAMLDVDPGG  60
GRGGGGGLSP VTMFTVPPQG LAQAYSSVEI QSEHPFSISV VPTTTTTTSF TQVPAESVDY  120
FHSEQRLQQS SSVNVDKPND DGYNWRKYGQ KQVKGSEFPR SYYKCTYPSC PVRKKVECSL  180
DGHVTAIIYK GEHNHQRPHP SKLTNDNSNV QQVSLSSHQM SKIDSDATAE HVLLGTSDTE  240
DEGDRETETD EKNYEPDLKR RNTEVRLLDP ALSQRTVSEP RIIVQTTSDV DLLEDGYRWR  300
KYGQKVVKGN PYPRSYYKCT TPGCKVRKHV ERASTDRKAV MTTYEGKHNH DVPAAKTNSH  360
TLASNNSASQ LKSQNALPEM NNINRRGQQQ PLAVARLRLK E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-40127354878Probable WRKY transcription factor 4
2lex_A1e-40127354878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15966GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514245.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-34AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514245.10.0probable WRKY transcription factor 4 isoform X2
SwissprotQ9ZQ701e-116WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S2Z3830.0A0A1S2Z383_CICAR; probable WRKY transcription factor 4 isoform X2
STRINGXP_004514244.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-112WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]