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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004514244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 402aa MW: 44406.2 Da PI: 7.1333 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 3.1e-32 | 141 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpv+kkve+s d++v+ i+Y+geHnh+ XP_004514244.1 141 DDGYNWRKYGQKQVKGSEFPRSYYKCTYPSCPVRKKVECSL-DGHVTAIIYKGEHNHQ 197 8****************************************.***************8 PP | |||||||
2 | WRKY | 103.5 | 1.2e-32 | 295 | 352 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k+v +tYeg+Hnh+ XP_004514244.1 295 EDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDRKAVMTTYEGKHNHD 352 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-28 | 132 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-25 | 139 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.365 | 140 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-34 | 140 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-25 | 141 | 197 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.0E-36 | 280 | 354 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-28 | 286 | 354 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.493 | 289 | 354 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 294 | 353 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-25 | 295 | 352 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MVGGGNGEER PPWSMESGGT PVGLSPGPMT LLSNLFGDND DCKSFSDLLA GAMLDVDPGG 60 GRGGGGGLSP VTMFTVPPQQ GLAQAYSSVE IQSEHPFSIS VVPTTTTTTS FTQVPAESVD 120 YFHSEQRLQQ SSSVNVDKPN DDGYNWRKYG QKQVKGSEFP RSYYKCTYPS CPVRKKVECS 180 LDGHVTAIIY KGEHNHQRPH PSKLTNDNSN VQQVSLSSHQ MSKIDSDATA EHVLLGTSDT 240 EDEGDRETET DEKNYEPDLK RRNTEVRLLD PALSQRTVSE PRIIVQTTSD VDLLEDGYRW 300 RKYGQKVVKG NPYPRSYYKC TTPGCKVRKH VERASTDRKA VMTTYEGKHN HDVPAAKTNS 360 HTLASNNSAS QLKSQNALPE MNNINRRGQQ QPLAVARLRL KE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-40 | 128 | 355 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-40 | 128 | 355 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 66 | GGRGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004514244.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 3e-34 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004514244.1 | 0.0 | probable WRKY transcription factor 4 isoform X1 | ||||
Swissprot | Q9ZQ70 | 1e-117 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A1S2Z380 | 0.0 | A0A1S2Z380_CICAR; probable WRKY transcription factor 4 isoform X1 | ||||
STRING | XP_004514244.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-113 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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