PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514235.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 488aa    MW: 52616.9 Da    PI: 8.2148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.7e-15301346555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_004514235.1 301 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKNLQ 346
                     9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-18294358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.403296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-12301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-17301350No hitNo description
SMARTSM003531.0E-16302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSQCVPSWDV EENPEPPRVT LRSNSNSTNP DVPMLDYDVA ELTWENGQIS MHGLGLPRVP  60
VKHSTNAATT PNKDTWEKPR ASGTLESIVN QATTIPHRGK SPFFAGGGMY GNVLVPWLDP  120
QRAAAISATT NGMTMDALVP CSNPTKEQRI QTMDSISRVG IGTYMVGGPT PVGSCSAAPA  180
ATQEEGALVV AAAVKRGRVA HVVGSGRGQS VSGSGTFGRQ SEQVTLDTYE REFGMGGFTS  240
TSIASLDNTS SEKQCTKTTV DDHDSVCHSR PTMEDADVDA KKRENRKSSV STKRSRAAAI  300
HNQSERKRRD KINQRMKTLQ KLVPNSNKTD KASMLDEVIE YLKNLQAQVQ IVNRFNMSSM  360
MMPMNMQQQL QMSIMNQMGM GMGMGMTGMP MGIGMGMGMD MNTMNRANIP NIPGMPPVLH  420
PSAFMPMASW DVGGSCDRLQ GPPGATGMTD PLSTLLGCQS QPMSMDAYSR IAAMCQQMQQ  480
PQGPGPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERKRRD
2305310RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514235.10.0transcription factor UNE10
TrEMBLA0A1S2Z3930.0A0A1S2Z393_CICAR; transcription factor UNE10
STRINGXP_004514235.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-90bHLH family protein