PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514060.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 368aa    MW: 41996.8 Da    PI: 6.0582
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073063382254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_004514060.1 306 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 338
                     59*****************************87 PP
2ELK27.95.5e-10259280122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+ +++++++E++
  XP_004514060.1 259 ELKHELKQGYKNKIVDIREEIL 280
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-1895139IPR005540KNOX1
PfamPF037902.3E-1797138IPR005540KNOX1
SMARTSM012562.0E-25147202IPR005541KNOX2
PfamPF037916.5E-19152201IPR005541KNOX2
SMARTSM011888.5E-4259280IPR005539ELK domain
PfamPF037899.1E-6259280IPR005539ELK domain
PROSITE profilePS5121310.022259279IPR005539ELK domain
PROSITE profilePS5007111.612279342IPR001356Homeobox domain
SMARTSM003891.2E-10281346IPR001356Homeobox domain
SuperFamilySSF466897.27E-16281345IPR009057Homeodomain-like
CDDcd000861.16E-10282343No hitNo description
Gene3DG3DSA:1.10.10.607.5E-25286343IPR009057Homeodomain-like
PfamPF059209.8E-18299338IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAFHHDHLSH EINFQPFTED QQLSQSRDMQ RMLPFSGTGS APTWLNNAAT LRQQNFLHLQ  60
PDTSQNDDVR GINMMEKIRD RNRTESNNTE SEELSQYKAD ILGHPLYDQL LSAHVSCLRI  120
ATPVDQLPRI DAQLQQSQRV VDKYSTLANG VVDEKELDQF MTHYVLLLCA FKEQLQQHVR  180
VHAMEAVMAC WELEQSLQSL TGVSPGEGTG ATMSDDEDDQ AESNANLYEG SLDGGDSLTF  240
GPLVPTESER SLMERVRQEL KHELKQGYKN KIVDIREEIL RKRRAGKLPG DTTSLLKAWW  300
QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HTNPSSSTGS KTKRKSSGAG  360
ETSNQSFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2966920.0KP296692.1 Pisum sativum cultivar SGE class II knotted-1-like 10 homeobox transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514060.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480011e-165KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A1S2Z2W60.0A0A1S2Z2W6_CICAR; homeobox protein knotted-1-like LET12 isoform X1
STRINGXP_004514060.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-160KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]