PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513719.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27878.4 Da    PI: 9.481
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  XP_004513719.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 74
                    79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.7961777IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-411776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-321893IPR002100Transcription factor, MADS-box
CDDcd002652.39E-431891No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-321939IPR002100Transcription factor, MADS-box
PfamPF003192.2E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325475IPR002100Transcription factor, MADS-box
PfamPF014863.9E-25100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.522103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MELPNHEDGE GSSQKKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSTRGRL YEYANNSVRA TIERYKKACS ATTNAESVSE ANTQFYQQES SKLRRQIRDI  120
QNLNRHILGE ALGSLSLKEL KNLEGRLEKG LSRVRSRKHE TLFADVEFMQ KREIDLQNQN  180
NYLRAKIAEC ERAQQQQQNM MPETYSESLP SQSYDRNFFP VNLLGSDQQY SRQDQTALQL  240
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201785169Myocyte-specific enhancer factor 2B
1tqe_R2e-201785169Myocyte-specific enhancer factor 2B
1tqe_S2e-201785169Myocyte-specific enhancer factor 2B
6c9l_A2e-201785169Myocyte-specific enhancer factor 2B
6c9l_B2e-201785169Myocyte-specific enhancer factor 2B
6c9l_C2e-201785169Myocyte-specific enhancer factor 2B
6c9l_D2e-201785169Myocyte-specific enhancer factor 2B
6c9l_E2e-201785169Myocyte-specific enhancer factor 2B
6c9l_F2e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2975660.0JX297566.1 Medicago monspeliaca voucher PI 641560 shatterproof mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513719.11e-178agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_004513720.11e-178agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_004513721.11e-178agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_027186051.11e-178agamous-like MADS-box protein AGL1 isoform X2
SwissprotQ93XH41e-125MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A1S2Z2981e-177A0A1S2Z298_CICAR; agamous-like MADS-box protein AGL1 isoform X1
STRINGXP_004513719.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]