PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513583.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 322aa    MW: 37072.9 Da    PI: 8.0167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.21.5e-3269173199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k ltpsdv+k++rlv+pk++ae++      ++ + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ ++
  XP_004513583.1  69 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDS 163
                     99****************************87444457889************************************************887799 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l++ ++r+
  XP_004513583.1 164 QRLFINWRRR 173
                     99*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-3264172IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-4064173IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-3067164No hitNo description
PfamPF023622.5E-2969173IPR003340B3 DNA binding domain
PROSITE profilePS5086314.29769174IPR003340B3 DNA binding domain
SMARTSM010191.0E-2569174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDLQGTTLWW TQNQPQQTML LVEPIHHPQP QWFNSQTYPN TPHFNTNEEN EDKDNTAIKL  60
IEDEKEPMFE KPLTPSDVGK LNRLVIPKQH AEKYFPLGGG DSGECKGLLL SFEDESGKCW  120
RFRYSYWNSS QSYVLTKGWS RYVKDKRLDA GDVVLFERHR VDSQRLFINW RRRKLNGNET  180
AQVSRGKVSD GNGKNEVAVG WSRGFYPAHP YPAHHLLPYQ HDHCLHAGRG SPQGQNQRTK  240
PVGNNSSSSS SSPRELRLFG VTMVCQPEHD STPQCSSYDS NNMPSTQGTD HTQHLYHYHQ  300
PSSHNSNSNS HSHVVRHQPY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-49641733113B3 domain-containing transcription factor NGA1
5os9_B7e-49641733113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2187281e-48KC218728.1 Vicia faba clone NAC-VF-156 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513583.10.0B3 domain-containing protein At2g36080-like
SwissprotQ9FNI32e-61Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1S2Z2300.0A0A1S2Z230_CICAR; B3 domain-containing protein At2g36080-like
STRINGXP_004513583.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-59B3 family protein