PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004513356.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 428aa MW: 48550.4 Da PI: 9.5566

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004513356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	148.4	4.9e-46	128	286	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...... 73 ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aik+lt++ s++s+s+c XP_004513356.1 128 PPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSkqknnnedgddddedakSFTSSSDCevvsdi 222 78************************************************************9999999999998888877777888777665 PP TCP 74 eaesssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 +++ss+ ++++++ g+ +k+++ k+ + ++s+ n++kesr+karararert++k +++n++ XP_004513356.1 223 KQHSSNLKQNQDGDGDFSKEKKlKRAQIKESSCIRANKMKESREKARARARERTSNKISNNNNT 286 6666666666666667777777577777777777889999*****************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-43	130	281	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.805	130	188	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.607	262	279	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MFPFNSNPYP SFVPNSSASS SSLFSFPFLN PENASSSNNS NNNTLFLDPF SIPYIPTHHH 60 HHPHHHNITN IQETLTNLAE NNNNSNNNSN SNNNNNNNNI AIPMAKQDPS TIGGGSHYGI 120 SCFLAKKPPK KDRHSKIYTS QGLRDRRVRL SIEIARKFFD LQDMLGFDKA SNTLDWLFTK 180 SKKAIKDLTK SKQKNNNEDG DDDDEDAKSF TSSSDCEVVS DIKQHSSNLK QNQDGDGDFS 240 KEKKLKRAQI KESSCIRANK MKESREKARA RARERTSNKI SNNNNTLKIH QLELKKKYPT 300 TNENFQAFHQ SRSSLQDHQL VSSSETPRDD FNVIEESIVI KRKLKPSLMV SHHHHHQHQN 360 HVIPKEATNF NNSEYHSYPN SSPNWDASNN SASSSNRSTF CAIASMNLST GLQIFGKSWE 420 ECTNPRLH

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MFPFNSNPYP SFVPNSSASS SSLFSFPFLN PENASSSNNS NNNTLFLDPF SIPYIPTHHH  60
HHPHHHNITN IQETLTNLAE NNNNSNNNSN SNNNNNNNNI AIPMAKQDPS TIGGGSHYGI  120
SCFLAKKPPK KDRHSKIYTS QGLRDRRVRL SIEIARKFFD LQDMLGFDKA SNTLDWLFTK  180
SKKAIKDLTK SKQKNNNEDG DDDDEDAKSF TSSSDCEVVS DIKQHSSNLK QNQDGDGDFS  240
KEKKLKRAQI KESSCIRANK MKESREKARA RARERTSNKI SNNNNTLKIH QLELKKKYPT  300
TNENFQAFHQ SRSSLQDHQL VSSSETPRDD FNVIEESIVI KRKLKPSLMV SHHHHHQHQN  360
HVIPKEATNF NNSEYHSYPN SSPNWDASNN SASSSNRSTF CAIASMNLST GLQIFGKSWE  420
ECTNPRLH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004513356.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513356.1	0.0	transcription factor DICHOTOMA-like
TrEMBL	A0A1S2Z1L0	0.0	A0A1S2Z1L0_CICAR; transcription factor DICHOTOMA-like
STRING	XP_004513356.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-27	TCP family protein