PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_004513134.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HRT-like

Protein Properties

Length: 393aa MW: 44364 Da PI: 9.6254

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004513134.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	59.3	6.3e-19	266	296	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil+dGs+C+r+P+++R RC eHKGmRi XP_004513134.2 266 ICGVILNDGSICTRPPIEKRVRCFEHKGMRI 296 8*****************************7 PP
2	HRT-like	58.5	1.1e-18	323	353	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+d s+C++qPvkgR+RC+eHKGmR+ XP_004513134.2 323 ICGIILDDSSTCSKQPVKGRQRCHEHKGMRT 353 8*****************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	1.8E-4	75	174	IPR000305	GIY-YIG nuclease superfamily

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MMVINRLKRE QCDHTKHDSS FSDWKILIGP SDWEDHSKGK EGCSRYRIPN LPQTFGPGVY 60 ELGIVVSRNY LGREIYKFAT DPCKVVVVYL GKAENVSARL QCYGRNGAHL SNASSSIESS 120 SSTLMRHSLF HHIFSKGYPI VYRWAPMENN SDALKTEAKL LDTFDYGWNT INNGRRRPYD 180 ILQMLDKIAS TTVTFSYVAK SLIPFIQNKV GIPIKSNKFP KTYDKSDEVD NYGSYRFLSK 240 IFKFNRSHPM IIQNSTSGAI EKYGKICGVI LNDGSICTRP PIEKRVRCFE HKGMRINVFN 300 AKAIGAPKLE LEIIDESITK TIICGIILDD SSTCSKQPVK GRQRCHEHKG MRTNVSNAKA 360 IRAPKLESEI IDDSISKTII CGIILNDGST CRK

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MMVINRLKRE QCDHTKHDSS FSDWKILIGP SDWEDHSKGK EGCSRYRIPN LPQTFGPGVY  60
ELGIVVSRNY LGREIYKFAT DPCKVVVVYL GKAENVSARL QCYGRNGAHL SNASSSIESS  120
SSTLMRHSLF HHIFSKGYPI VYRWAPMENN SDALKTEAKL LDTFDYGWNT INNGRRRPYD  180
ILQMLDKIAS TTVTFSYVAK SLIPFIQNKV GIPIKSNKFP KTYDKSDEVD NYGSYRFLSK  240
IFKFNRSHPM IIQNSTSGAI EKYGKICGVI LNDGSICTRP PIEKRVRCFE HKGMRINVFN  300
AKAIGAPKLE LEIIDESITK TIICGIILDD SSTCSKQPVK GRQRCHEHKG MRTNVSNAKA  360
IRAPKLESEI IDDSISKTII CGIILNDGST CRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004513134.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513134.2	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1S2Z164	0.0	A0A1S2Z164_CICAR; protein EFFECTOR OF TRANSCRIPTION 2-like
STRING	XP_004513134.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-85	effector of transcription2