PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513098.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 299aa    MW: 32964.2 Da    PI: 9.6638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-14101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
   XP_004513098.1 101 PWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 145
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.9E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.90294150IPR017930Myb domain
SuperFamilySSF466895.91E-1895150IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-1897148IPR006447Myb domain, plants
SMARTSM007173.1E-1198148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1198144IPR009057Homeodomain-like
PfamPF002497.4E-12101145IPR001005SANT/Myb domain
CDDcd001676.39E-10101146No hitNo description
Gene3DG3DSA:4.10.60.101.9E-4184204IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCNS LRGGGNSSFV GVRLFGVQLD LSSSCVSMKK SFSMDSLFPT  60
SSSSPSSSFS SSRLSIDDRT SIGYLSDGLI VRAQERKKGV PWTEEEHRKF LVGLEKLGKG  120
DWRGISRNYV TTRTPTQVAS HAQKYFIRLS TINKKKRRSS LFDMVGSSNR NRRVDPMNIS  180
KSKSGESICC RHDDYEHVKS KCEAEKDATL SLLVTSFEQN IGDSNINSSV CQVEEAEHEN  240
VPVWLHPLTK SLNMKLVMPN SSNAATPDLE LSLAVPKAKN MEQDKTSSSS FLIGPISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513098.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1374761e-174BT137476.1 Medicago truncatula clone JCVI-FLMt-15J15 unknown mRNA.
GenBankBT1480621e-174BT148062.1 Medicago truncatula clone JCVI-FLMt-15G22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513098.10.0transcription factor MYBS3-like
SwissprotQ7XC579e-51MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1S2Z1270.0A0A1S2Z127_CICAR; transcription factor MYBS3-like
STRINGXP_004513098.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-52MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]