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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GeBP | ||||||||
Protein Properties | Length: 231aa MW: 26923 Da PI: 10.4377 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 68.2 | 1.8e-21 | 17 | 105 | 1 | 96 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klf+r++se+De+v+LqG+ ++ ++ ++d ++y+++k+++sfk s+ ql eKir+L+ Kf +kvk+ k p f ++hd ++lskk+ XP_004512843.1 17 KLFERVFSENDEVVILQGVAA---RKVVNIYSDDAEIYNYFKEKLSFKPSQAQLKEKIRKLRMKFIGKVKN----KLPIFPRQHDLRLYNLSKKV 104 579***************864...57778999***************************************....99****************** PP DUF573 96 W 96 W XP_004512843.1 105 W 105 * PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.6E-19 | 19 | 105 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVKEMKSFEQ GSSSTRKLFE RVFSENDEVV ILQGVAARKV VNIYSDDAEI YNYFKEKLSF 60 KPSQAQLKEK IRKLRMKFIG KVKNKLPIFP RQHDLRLYNL SKKVWIPKTK ELDENGLKNM 120 FESGRKLLNK KTKAEFDERW NKLKLMEIDY LNYRSAFCED LSKTLSSVGS LDRRLLTKRW 180 FYPGQATKAG DLGGNRERKE REGEEAGWSS WLTRQAHDLK IAGSNPAPAM S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC189947 | 2e-93 | KC189947.1 Vicia faba mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512843.1 | 1e-170 | probable transcription factor At4g00390 | ||||
TrEMBL | A0A1S2Z0G7 | 1e-168 | A0A1S2Z0G7_CICAR; probable transcription factor At4g00390 | ||||
STRING | XP_004512843.1 | 1e-169 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-17 | DNA-binding storekeeper protein-related transcriptional regulator |