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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 810aa MW: 90467.7 Da PI: 6.1842 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.2 | 3.7e-20 | 88 | 143 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k XP_004512486.1 88 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMK 143 688899***********************************************998 PP | |||||||
2 | START | 142.1 | 5.6e-45 | 290 | 514 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 la + ++elvk+ + +ep+W + s e + evl +e ++ ++ea r+ +vv+m++++lv +ld +W e ++ +a XP_004512486.1 290 LAASSMTELVKMCQTNEPLWIRNS--ESEREVLNFEEHARLfqwplklehrseLRTEATRDAAVVIMNSVTLVDAFLDAQ-KWMELFPtivaRAR 381 78899*******************..88999998887777699*************************************.99999999999*** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 t++ + sg g+lqlm+ae+q+lsplv+ R+ f+Ry++q ++g+w+ivd vds ++ + s+ R ++ Sg++i++++ng+s+vtwv XP_004512486.1 382 TVQILASGasghasGTLQLMYAEFQVLSPLVStREIHFLRYCQQnAEEGTWAIVDFPVDSFHQNF-HNSYPRYCRRSSGCVIQDMPNGYSRVTWV 475 ************************************************************99999.9**************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh+ + ++ +h+++ v sg+a+ga++w+ lqrqce+ XP_004512486.1 476 EHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 514 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-19 | 74 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-21 | 83 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-18 | 86 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.7E-18 | 88 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.78E-17 | 88 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.348 | 280 | 517 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.1E-30 | 282 | 516 | No hit | No description |
CDD | cd08875 | 5.28E-109 | 284 | 513 | No hit | No description |
SMART | SM00234 | 2.1E-25 | 289 | 514 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-37 | 290 | 514 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.9E-4 | 377 | 476 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.73E-17 | 551 | 712 | No hit | No description |
SuperFamily | SSF55961 | 6.73E-17 | 743 | 784 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
MYGDCQVMST MGGNVVVNSD TLFSSPIQNP NFNFMQTMPF QPFPSMKEED GMLRGKEEIM 60 ESGSGSEQVE DKSGNEQESN VEQQPSKKKR YHRHTARQIQ EMEALFKECP HPDDKQRLKL 120 SHDLGLKPRQ VKFWFQNRRT QMKAQQDRSD NVILRAENES LKNENYRLQS ALRNIICPNC 180 GGPCIMGADL GLDDHQLRLE NARLREELER VCCITSRYSG RQIQTMAPPP SLMPPSLDLD 240 MNIYPTRHFN DQIPPCSQMI PVPMLHSEPS HFQEGGLLLM EDEKSLAMEL AASSMTELVK 300 MCQTNEPLWI RNSESEREVL NFEEHARLFQ WPLKLEHRSE LRTEATRDAA VVIMNSVTLV 360 DAFLDAQKWM ELFPTIVARA RTVQILASGA SGHASGTLQL MYAEFQVLSP LVSTREIHFL 420 RYCQQNAEEG TWAIVDFPVD SFHQNFHNSY PRYCRRSSGC VIQDMPNGYS RVTWVEHAKV 480 VEKPVHQIFS NYVYSGMAFG AQRWLGVLQR QCERVASLMA RNISDLGVIP SPEARKNLMK 540 LAHRMIKTFS LNMTTCGGQS WTAISDLPED TVRITTRKIT EPGQPNGVIL AAVSTTWLPY 600 SHTKIFDFLR DERHRSQMDA LSNGNSLNEV AHIANGSHPG NCISLLRINV ASNSSQNVEL 660 MLQESCTDQS GSLVVYTTID VDSIQLAMSG EDPSCIALLP QGFMIVPMVS SNIDTLSCLG 720 NSSDQGVTGT PSSTTTTTTT ANSGCLLIMG MQVLASTIPS AKLNLSSVTA INNHLCNTLH 780 QIESALCGNN NNNCFVGSCN EPTTSAAPPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT485796 | 1e-108 | CT485796.1 Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512486.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A1S2YZR8 | 0.0 | A0A1S2YZR8_CICAR; homeobox-leucine zipper protein ROC3 | ||||
STRING | XP_004512486.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10946 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |