PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512486.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 810aa    MW: 90467.7 Da    PI: 6.1842
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2088143156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_004512486.1  88 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMK 143
                     688899***********************************************998 PP

2START142.15.6e-452905142206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     la + ++elvk+ + +ep+W + s  e + evl  +e ++              ++ea r+ +vv+m++++lv  +ld   +W e ++    +a 
  XP_004512486.1 290 LAASSMTELVKMCQTNEPLWIRNS--ESEREVLNFEEHARLfqwplklehrseLRTEATRDAAVVIMNSVTLVDAFLDAQ-KWMELFPtivaRAR 381
                     78899*******************..88999998887777699*************************************.99999999999*** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     t++ + sg      g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds  ++  + s+ R  ++ Sg++i++++ng+s+vtwv
  XP_004512486.1 382 TVQILASGasghasGTLQLMYAEFQVLSPLVStREIHFLRYCQQnAEEGTWAIVDFPVDSFHQNF-HNSYPRYCRRSSGCVIQDMPNGYSRVTWV 475
                     ************************************************************99999.9**************************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     eh+ + ++ +h+++   v sg+a+ga++w+  lqrqce+
  XP_004512486.1 476 EHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 514
                     *************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1974146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-2183150IPR009057Homeodomain-like
PROSITE profilePS5007116.79585145IPR001356Homeobox domain
SMARTSM003891.0E-1886149IPR001356Homeobox domain
PfamPF000469.7E-1888143IPR001356Homeobox domain
CDDcd000862.78E-1788146No hitNo description
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PROSITE profilePS5084843.348280517IPR002913START domain
SuperFamilySSF559618.1E-30282516No hitNo description
CDDcd088755.28E-109284513No hitNo description
SMARTSM002342.1E-25289514IPR002913START domain
PfamPF018521.1E-37290514IPR002913START domain
Gene3DG3DSA:3.30.530.204.9E-4377476IPR023393START-like domain
SuperFamilySSF559616.73E-17551712No hitNo description
SuperFamilySSF559616.73E-17743784No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MYGDCQVMST MGGNVVVNSD TLFSSPIQNP NFNFMQTMPF QPFPSMKEED GMLRGKEEIM  60
ESGSGSEQVE DKSGNEQESN VEQQPSKKKR YHRHTARQIQ EMEALFKECP HPDDKQRLKL  120
SHDLGLKPRQ VKFWFQNRRT QMKAQQDRSD NVILRAENES LKNENYRLQS ALRNIICPNC  180
GGPCIMGADL GLDDHQLRLE NARLREELER VCCITSRYSG RQIQTMAPPP SLMPPSLDLD  240
MNIYPTRHFN DQIPPCSQMI PVPMLHSEPS HFQEGGLLLM EDEKSLAMEL AASSMTELVK  300
MCQTNEPLWI RNSESEREVL NFEEHARLFQ WPLKLEHRSE LRTEATRDAA VVIMNSVTLV  360
DAFLDAQKWM ELFPTIVARA RTVQILASGA SGHASGTLQL MYAEFQVLSP LVSTREIHFL  420
RYCQQNAEEG TWAIVDFPVD SFHQNFHNSY PRYCRRSSGC VIQDMPNGYS RVTWVEHAKV  480
VEKPVHQIFS NYVYSGMAFG AQRWLGVLQR QCERVASLMA RNISDLGVIP SPEARKNLMK  540
LAHRMIKTFS LNMTTCGGQS WTAISDLPED TVRITTRKIT EPGQPNGVIL AAVSTTWLPY  600
SHTKIFDFLR DERHRSQMDA LSNGNSLNEV AHIANGSHPG NCISLLRINV ASNSSQNVEL  660
MLQESCTDQS GSLVVYTTID VDSIQLAMSG EDPSCIALLP QGFMIVPMVS SNIDTLSCLG  720
NSSDQGVTGT PSSTTTTTTT ANSGCLLIMG MQVLASTIPS AKLNLSSVTA INNHLCNTLH  780
QIESALCGNN NNNCFVGSCN EPTTSAAPPK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT4857961e-108CT485796.1 Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512486.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1S2YZR80.0A0A1S2YZR8_CICAR; homeobox-leucine zipper protein ROC3
STRINGXP_004512486.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7