PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 302aa    MW: 33888.1 Da    PI: 6.6025
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.8e-202889257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  XP_004512229.1 28 STRWTPTTDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 89
                    58*****************8567*************************************97 PP

2Wus_type_Homeobox113.51.1e-362791265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_004512229.1 27 SSTRWTPTTDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 91
                       789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-8589IPR009057Homeodomain-like
SuperFamilySSF466899.84E-122195IPR009057Homeodomain-like
PROSITE profilePS5007110.9162490IPR001356Homeobox domain
SMARTSM003891.3E-52694IPR001356Homeobox domain
PfamPF000463.5E-172989IPR001356Homeobox domain
CDDcd000868.30E-72991No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEQQQQQTGN EEGGGSSGKG GYMSRQSSTR WTPTTDQIRI LKDLYYNNGI RSPSAEQIQR  60
ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTSDHNNN NNNNNLPMQR SATITNNVAV  120
AAWKQIEEQQ SPIIQHKYSN NIISSTGLSS ASCSSAEMVT VGQIGNYGYG SVPMEKSFRE  180
CTISAGCSSG HVGSTINHHL GWVGHVGPYS STYANLFEKI RPEEEIMEEE QEEENGSPEI  240
ETLPLFPMHG EDIHGYCNLK SNSSNYGAPS WYQAEDGFIN ASRTTSLELS LNSYTRRSPD  300
YA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512229.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4776811e-128FJ477681.1 Medicago truncatula WUSCHEL (WUS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512229.10.0protein WUSCHEL
SwissprotQ8LL117e-82WUS_PETHY; Protein WUSCHEL
TrEMBLA0A1S2YZ610.0A0A1S2YZ61_CICAR; protein WUSCHEL
STRINGXP_004512229.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-40WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]