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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_004512080.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family |
SRS |
| Protein Properties |
Length: 307aa MW: 33723.1 Da PI: 6.1665 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004512080.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 193.5 | 7.1e-60 | 103 | 244 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97
sg++sCqdCGnqakkdC h RCRtCCksrgfdC+thvkstWvpaa+rrerqqq++ ++++++++ +++ + +r s+ ++l+ ++
XP_004512080.1 103 SGGISCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQHHQHTHHNNKLETSLA-CTR-----LPSN--PSSLPLP-AP 188
7899**********************************************99988764443332222211.111.....1222..2333333.34 PP
DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
le ++P+ vss+a frcvrvss+d++eee+aY tav+igGhvf+GiLyd+G++
XP_004512080.1 189 GLLEEVNFPAMVSSQAEFRCVRVSSIDESEEEYAYSTAVNIGGHVFRGILYDYGPD 244
5677778***********************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MAGFFSLGRG NNNNNEGENQ QNNIPPPTPT TDTLFWYNNQ NKNDDVVSTY RGFEIWNQHQ 60
QQQQQQFLGG VEQQDLYSSA AALGVGPSRG SDERRSNELV ASSGGISCQD CGNQAKKDCP 120
HVRCRTCCKS RGFDCQTHVK STWVPAARRR ERQQQQHHQH THHNNKLETS LACTRLPSNP 180
SSLPLPAPGL LEEVNFPAMV SSQAEFRCVR VSSIDESEEE YAYSTAVNIG GHVFRGILYD 240
YGPDGSGNYM AAGNTSSSGV EAVVEPLNLI SGVPSSEIVD PCSLYPAPIN TFMPPSGTQF 300
FPHPRST
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CR955005 | 1e-54 | CR955005.2 Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G66350.1 | 2e-61 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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