PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 307aa MW: 34099 Da PI: 6.8267 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.9 | 1.5e-42 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrrkC+++Cv+apyfp ++p++f +vhk+FGasnv+kll++l+ ++r+da++sl+yeAear rdPvyG+vg+i+ lq++l+q + el+ XP_004511963.1 8 PCAACKSLRRKCTRECVFAPYFPPDNPQRFTYVHKVFGASNVTKLLNELDATQRDDAVKSLAYEAEARFRDPVYGCVGLISLLQHKLRQIQGELN 102 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_004511963.1 103 NAKKE 107 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.653 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-42 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTSSSNSPCA ACKSLRRKCT RECVFAPYFP PDNPQRFTYV HKVFGASNVT KLLNELDATQ 60 RDDAVKSLAY EAEARFRDPV YGCVGLISLL QHKLRQIQGE LNNAKKELAT YIGPQALQGV 120 PTTILQQQHP NNHFGNSLYP YNNGNVLTTV TAATQMVISD LQPPPSQHPI LEAQQLAAAV 180 VAREQQEMFR SFEHQQQQQE FLRFSGGLDV DSVSSGGDFN HVSPVVVAST DQLSPSLALG 240 SFDNTYHHMQ QPQQGHGEPH HQHLTLQAQL LLPPQQKQVQ TQTQHSSLTH HQQQTESEEC 300 RSVGPSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 2 | 124 | 5 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 2 | 124 | 5 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511963.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511963.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_004511964.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_027193026.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 5e-65 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A1S2YYJ9 | 0.0 | A0A1S2YYJ9_CICAR; LOB domain-containing protein 36-like | ||||
STRING | XP_004511963.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-63 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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