PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25590 Da PI: 8.0864 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.4 | 3.1e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+ +r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+ XP_004511855.1 2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLLEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelal 96 ++e++l XP_004511855.1 97 AVETVL 102 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.806 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPQPQR 60 PALFQSLLLE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTPRPI PEFLGLDALT 120 STADDASEGE VTCNDARKVQ DPNQNSRFVS SRSNKVASGG KRKRYDFATT DLNLRLTPCF 180 LQNALTSSCR REIRRPGTPS MNSEESVTTM TSLESGIGDQ YVNDGDRKVL NLFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511855.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143032 | 1e-125 | BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511855.1 | 1e-174 | LOB domain-containing protein 37 isoform X1 | ||||
Swissprot | Q9SN23 | 2e-80 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1S2YYA3 | 1e-173 | A0A1S2YYA3_CICAR; LOB domain-containing protein 37 isoform X1 | ||||
STRING | XP_004511855.1 | 1e-173 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-83 | LOB domain-containing protein 38 |