PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510989.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YA
Protein Properties Length: 332aa    MW: 37404.1 Da    PI: 9.8564
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.51.7e-31200256158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk  +k rkpylheSRh hAlrR+Rg+gGrF
  XP_004510989.1 200 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-IKVRKPYLHESRHLHALRRARGNGGRF 256
                     69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-35198259IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.056199259IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-26201256IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.5E-24202224IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860204224IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.5E-24233256IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYHAPLYHLN AIQVLKAKAP NIPRKTCDSM PEKPESDDFG VKHREEVQLP SSIYSHHQPW  60
WLGVGEIENA SKSSSADQLT RSIMNGVTYS EANGVDINKQ RHPLVSPSLS VTDKSGGDVA  120
KEHRNIKHAL SSTAFTLDKC LNPNLQTELD GHSIVLTSPH SNAQFGQILT TYGQQSMMNP  180
QKLYRMHHHA RMLLPLEMEE EPVYVNAKQY HGILRRRQSR AKAELEKKAI KVRKPYLHES  240
RHLHALRRAR GNGGRFLNTK KLEHNNSNVT FDKGNNEKQG SSNASQSMHK MQGFNICYHD  300
GNGFTTLCHS QANGKQEGDF FGQERSPNGA IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19200260262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510989.10.0nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A1S2YWE30.0A0A1S2YWE3_CICAR; nuclear transcription factor Y subunit A-1-like isoform X1
STRINGXP_004510988.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.13e-28nuclear factor Y, subunit A7