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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 24204.2 Da PI: 8.1475 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 24 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael XP_004510942.1 24 PCGACKFLRRKCLSGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVITICYEAQARMRDPVYGCVAHIFTLQQQVVSLQAEL 118 7***********************9989******************************************************************* PP DUF260 95 allkee 100 ++l+ + XP_004510942.1 119 SYLQGH 124 *99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.178 | 23 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-40 | 24 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSINSSCSGS GGGCGGGNSG ACGPCGACKF LRRKCLSGCI FAPYFDSEQG ASHFAAVHKV 60 FGASNVSKLL QNVPVHKRLD AVITICYEAQ ARMRDPVYGC VAHIFTLQQQ VVSLQAELSY 120 LQGHIATYEV PQPPKTSPPQ ATIAPSMVSL ANLPLASSSS INPATYDLSS LFDPMAQTSS 180 WAMHQRPNGQ YFGSGTSTSN NSGGDLQSLA RELLLRYGSS NDPSSNSLSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 20 | 128 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 20 | 128 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510942.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510942.1 | 1e-170 | LOB domain-containing protein 30-like | ||||
Swissprot | O81323 | 4e-76 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A1S2YWA9 | 1e-168 | A0A1S2YWA9_CICAR; LOB domain-containing protein 30-like | ||||
STRING | XP_004510942.1 | 1e-169 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 5e-66 | LBD family protein |
Publications ? help Back to Top | |||
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