PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510627.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 472aa    MW: 53788.7 Da    PI: 5.6283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12300346354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er+RR++iN++f  Lr ++P+       +++Ka+ L  Av++I++L
  XP_004510627.1 300 MSHVEAERQRREKINHRFYALRAVVPNV-----SRMDKASLLSDAVDFINEL 346
                     589************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-3935192IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.977297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16299357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.26E-13300350No hitNo description
PfamPF000105.0E-10301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-15301349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEGFIISPSS SSSMISFPHE KNPSPSPPPP QIPTLEQKLQ FLLQAQPNHW VYAIFWQTTK  60
DERDNIFLTW GEGHFHDTKE TTTTSSETVN DNDTCTNGDA LLFYIMSLSR TFSVGNSSSN  120
SLPGKAFALN SVLWLNSKHE LQFYNCDRSN EAHVHGIETL ICIPTTNGVI EMGSYENIQQ  180
NWNLVHQAKS MFQTSLSESN SKLDLFSTDP LDRIKTFDQN ILFTDVGIIS GTGEETDEMQ  240
KMMNRTWLQK PKTVSSCYVD SEYSDSEYYP QLETKKNDSF EKREPKKRGR KPLLGNPTPM  300
SHVEAERQRR EKINHRFYAL RAVVPNVSRM DKASLLSDAV DFINELKSKI VELELEQQKE  360
LKKLKIENMD NQSTATTSTV VDQKRISCNN ISLEIDVKII GGDAMVRVQC ENVNHPGARL  420
MSVLKDLEFQ VHHASISCVN EIMVQDVVVQ VPINMRNEER LRSAILMRLD QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-23281922192Transcription factor MYC3
4rqw_B9e-23281922192Transcription factor MYC3
4rs9_A9e-23281922192Transcription factor MYC3
4yz6_A9e-23281922192Transcription factor MYC3
5gnj_A1e-23294367177Transcription factor MYC2
5gnj_B1e-23294367177Transcription factor MYC2
5gnj_E1e-23294367177Transcription factor MYC2
5gnj_F1e-23294367177Transcription factor MYC2
5gnj_G1e-23294367177Transcription factor MYC2
5gnj_I1e-23294367177Transcription factor MYC2
5gnj_M1e-23294367177Transcription factor MYC2
5gnj_N1e-23294367177Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510627.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510627.10.0transcription factor bHLH14
TrEMBLA0A1S2YVJ70.0A0A1S2YVJ7_CICAR; transcription factor bHLH14
STRINGXP_004510627.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-47bHLH family protein