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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 22199.4 Da PI: 9.3642 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.3 | 4.6e-14 | 20 | 66 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ie + qv+fskR+ ++ K ELS++C+a+ a+ii s++ kly XP_004510582.1 20 KKIEQLNKLQVSFSKRKLRLFNKVTELSIMCQAKTAMIITSPNEKLY 66 578888899*************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-15 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.675 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-17 | 13 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-11 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-14 | 21 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-11 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-11 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MVSSNGNSTT TKPKRKIDIK KIEQLNKLQV SFSKRKLRLF NKVTELSIMC QAKTAMIITS 60 PNEKLYACGY PNSDSVINQF IASENNVVID NEKKKQDEEI FETLRFQYEE LQEKLKEEKN 120 ILLKERNKGD ACFTSWWNHS IDDMSFESLE KFKNSLENLK LNIVTALEEK RVNSIYSTQP 180 HQERIKLLKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510582.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510582.1 | 1e-136 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S2YVK0 | 1e-135 | A0A1S2YVK0_CICAR; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_004510582.1 | 1e-135 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13227 | 10 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-20 | AGAMOUS-like 62 |