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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_004510487.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family |
LBD |
Protein Properties |
Length: 300aa MW: 34138.1 Da PI: 5.692 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_004510487.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 125.9 | 1.9e-39 | 22 | 122 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn+ k++k l++ +++am+++++++++ra+dPv G+++ i++lq q+e kael+
XP_004510487.1 22 ACAACKYQRRKCAPDCILAPYFPHDKQRQFLNAHKLFGVSNINKIIKYLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIEYCKAELD 116
7********************************************************************************************** PP
DUF260 96 llkeel 101
l++++l
XP_004510487.1 117 LVHQQL 122
***986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MNNNNITCIT RNNSNNNNTT QACAACKYQR RKCAPDCILA PYFPHDKQRQ FLNAHKLFGV 60 SNINKIIKYL DPPLKDQAMR TIIFQSDMRA NDPVGGCYKY IQDLQAQIEY CKAELDLVHQ 120 QLALFRAQAQ QQQQVYGGDQ VIMNGDSLLG FYNQGSIVSA NNPHYQYNIQ QMVPQQEQEQ 180 YLMMHESNSS IHNSPLQQHI NSWAMQSSIS LSSLSLHGQS SNASDEYDHK QILDIPCDER 240 NELGFDSREI LHHSDEAILF KIDDGMIKAE DDYIQQAQVQ AQDHDLKGAA TLFTLTNCTS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC140915 | 1e-107 | AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence. |