PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510442.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 648aa    MW: 71741.7 Da    PI: 7.6679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08534582348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
   XP_004510442.1 534 AWTLVEVMKLVEGVSRCGPGRWSEIKRLSFssySYRTSVDLKDKWRNLL 582
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.791527586IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-12529589IPR009057Homeodomain-like
SuperFamilySSF466892.61E-15529591IPR009057Homeodomain-like
SMARTSM007171.7E-8531584IPR001005SANT/Myb domain
CDDcd116602.81E-19533583No hitNo description
PfamPF002491.2E-5534582IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
METVVGIEDN DDGKLEDSVV DRSSSAALSS SPKKISNPVV YKLVRVEGDG RLVPATDDEV  60
MEVEDFLEYE NSEMRVVADT GQSLECISIE RSSSGKLRLE CSEGVSQLGT AEADLGKLNA  120
KFQYIEQMLQ KVKQEERLRL SSRSPVHSHV KIDSQCSADK FPVVNEKVRS ETPYQEAPSI  180
ASSLNYSHSN QSGSIDQCSR PSEGVIESGS SASDVYSTSK HNFSMPEGEI CLDKLSIKEL  240
HELFKVTFGR ETTVKDKQWL KRRIAMSLTN SCDVSATTFT VKDNKITRKC EEECSGNASA  300
AAVISVKNMA GEGCGIEDNQ VASETRLKNL NVENELRDED QQREERAAKR IRKPTKRYIE  360
ELSENESREH IPRSSSSNKN IGHGHVSPTA YVEPARSAFP EARMFITRFD SLGGSDVQIP  420
CVSRVRRSRP RKNIKSLMKF LPTGVGEAAK LSNGSDADSE IQDKVSKPCS MPVKMHLLST  480
TESVKEKQCL VIGTTEPRQE LRPKRIDPSS NTSEGDIVTV PTAKGGMRRK HHRAWTLVEV  540
MKLVEGVSRC GPGRWSEIKR LSFSSYSYRT SVDLKDKWRN LLKASFAQTP ADEGMNSRKH  600
GTAPIPEPIL VRVRELAEMN SQAPQNFSSS KLTASGPGSV HGDRLGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425431RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510442.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510442.10.0uncharacterized protein LOC101500283 isoform X1
TrEMBLA0A1S2YV880.0A0A1S2YV88_CICAR; uncharacterized protein LOC101500283 isoform X1
STRINGXP_004510442.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-106TRF-like 6