PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NF-YA | ||||||||
Protein Properties | Length: 297aa MW: 32467.2 Da PI: 8.9928 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.7 | 7.9e-33 | 146 | 202 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++I++RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF XP_004510429.1 146 EEPIYVNAKQYHAIMRRRQYRAKLEAQNKL-IKNRKPYLHESRHLHALKRARGSGGRF 202 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.7E-37 | 144 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.735 | 145 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-27 | 147 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-24 | 148 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 150 | 170 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.3E-24 | 179 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MSENLTLKMS VLPQQCHKTK PLGFQFQDQD SSSTQSTGQS YLEVGSGQSG PISVQYTNSS 60 ACSTLSKTGG KSVQGIIRST AGSQDFSFPP SQLDHNQSLA HVAFPHAETC FSGLLAAPYG 120 PQNNVHHAQL VGMAPVRIPL PLDLCEEPIY VNAKQYHAIM RRRQYRAKLE AQNKLIKNRK 180 PYLHESRHLH ALKRARGSGG RFLNTKKLQD HGLNVSSSTQ LNLSENVAGS KVHQVENFRD 240 GASTTACSDV TSTSNSDDMF QQHESDFRSC GYPSHMQGFS ADVGGGGRNQ HHLSVLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-21 | 146 | 212 | 2 | 73 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510429.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510428.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
TrEMBL | A0A1S2YV67 | 0.0 | A0A1S2YV67_CICAR; nuclear transcription factor Y subunit A-3 isoform X1 | ||||
STRING | XP_004510428.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-60 | nuclear factor Y, subunit A3 |